Kombucha, kimchi and yogurt: how fermented foods could be harmful to your health (2024)

Fermented foods have become very popular, thanks to claims about their nutritional properties and reported health benefits, such as improving digestion, boosting immunity and even helping people lose weight. Some of the most popular fermented foods include kefir, kombucha, sauerkraut, tempeh, natto, miso, kimchi and sourdough bread.

But though these fermented foods might offer us many health perks, most people aren’t aware that they might not work for everyone. For some people, fermented foods might cause serious health issues.

Fermented foods are loaded with microorganisms, such as live bacteria and yeast (known as probiotics). However, not all microorganisms are bad. Many, like probiotics, are harmless and are even beneficial to us.

During the process of fermentation, probiotics convert carbohydrates (starch and sugar) into alcohol and/or acids. These act as a natural preservative and give fermented foods their distinctive zest and flavour. Many factors affect fermentation, including the type of probiotic, the primary metabolites these microbes produce (such as lactic acid, or certain amino acids), and the food undergoing fermentation. For example, probiotic yogurt is produced by fermenting milk, most commonly with lactic acid bacteria that produce lactic acid.

Fermented foods contain high amounts of probiotics, which are generally considered safe for the majority of people. In fact, they’ve been shown to have anti-oxidant, anti-microbial, anti-fungal, anti-inflammatory, anti-diabetic and anti-atherosclerotic activity. However, some people might experience severe side effects after consuming fermented foods.

1. Bloating

The most common reaction to fermented foods is a temporary increase in gas and bloating. This is the result of excess gas being produced after probiotics kill harmful gut bacteria and fungi. Probiotics secrete antimicrobial peptides that kill harmful pathogenic organisms like Salmonella and E. Coli.

A recent study showed this antimicrobial effect of probiotic Lactobacilli strains found in commercial yogurt. Although bloating after eating probiotics seems to be a good sign that the harmful bacteria are being removed from the gut, some people might experience severe bloating, which can be very painful.

Drinking too much kombucha can also lead to excess sugar and calorie intake, which may also lead to bloating and gas.

2. Headaches and migraines

Fermented foods rich in probiotics – including yogurt, sauerkraut and kimchi – naturally contain biogenic amines produced [during fermentation]. Amines are created by certain bacteria to break down the amino acids in fermented foods. The most common ones found in probiotic-rich foods include histamine and tyramine.

Some people are sensitive to histamine and other amines, and may experience headaches after eating fermented foods. Because amines stimulate the central nervous system, they can increase or decrease blood flow, which can trigger headaches and migraines. One study found that low-histamine diets reduced headaches in 75% of participants. Taking a probiotic supplement might be therefore preferred.

3. Histamine intolerance

Histamine is plentiful in fermented foods. For most, our body’s specific enzymes will naturally digest them. However, some people don’t produce enough of these enzymes. This means histamine won’t be digested and will instead be absorbed into the bloodstream.

This can cause a range of histamine intolerance symptoms. The most common are itching, headaches or migraines, runny nose (rhinitis), eye redness, fatigue, hives and digestive symptoms include diarrhoea, nausea and vomiting.

However, histamine intolerance can also cause more severe symptoms, including asthma, low blood pressure, irregular heart rate, circulatory collapse, sudden psychological changes (such as anxiety, aggressiveness, dizziness and lack of concentration) and sleep disorders.

4. Food-borne illness

While most fermented foods are safe, it’s still possible for them to get contaminated with bacteria that can cause illness. In 2012, there was an outbreak of 89 cases of Salmonella in the US because of unpasteurised tempeh.

Two large outbreaks of Escherichia coli, were reported in South Korean schools in 2013 and 2014. They were associated with eating contaminated fermented vegetable kimchi.

In most cases, probiotics found in fermented milk products such as cheese, yogurt and buttermilk can effectively prevent the growth of certain bacteria, such as Staphylococcus aureus and Staphylococcal enterotoxins which can cause food poisoning. But in some cases probiotics fail and bacteria can actually secrete toxins, so the product may be hazardous.

Kombucha, kimchi and yogurt: how fermented foods could be harmful to your health (1)

5. Infection from probiotics

Probiotics are generally safe for the vast majority of people. However, in rare cases, they can cause infection – especially in people who have a compromised immune system.

A London study reported the first case of a 65-year-old diabetic patient whose liver abscess had been caused by probiotic consumption. Susceptible patients, such as those with compromised immunity, should be advised against consuming too many probiotics.

Treatment with probiotics can cause serious infections, such as pneumonia in vulnerable people and systemic infections, including sepsis and endocarditis.

6. Antibiotic resistance

Probiotic bacteria can carry genes that confer resistance to antibiotics. These antibiotic resistance genes may pass to other bacteria found in the food chain and gastrointestinal tract via horizontal gene transfer. The most common antibiotic resistance genes carried by fermented foods are against erythromycin and tetracycline, which are used to treat respiratory infections and some sexually transmitted diseases.

Researchers found resistant probiotic strains in commercially available dietary supplements, which could mean resistance to several common types of antibiotics used to treat serious bacterial infections.

Read more: Antibiotic resistance: researchers have directly proven that bacteria can change shape inside humans to avoid antibiotics

Research has also found six probiotic Bacillus strains found in food products (including kimchi, yogurt and olives) are also resistant to several antibiotics.

And, a recent Malaysian study showed probiotic Lactobacilli bacteria in kefir carry resistance to numerous antibiotics, including ampicillin, penicillin and tetracycline. These are used to treat serious human diseases including bladder infections, pneumonia, gonorrhoea, and meningitis.

Another study also showed lactic acid bacteria found in Turkish dairy products were resistant mainly to vancomycin antibiotic, which is the drug of choice for treatment of MRSA infection.

While there are a wide variety of health benefits that can happen from consuming fermented foods, these may not work for everyone. While most people will be fine eating fermented foods, for some they could cause serious health problems.

More on evidence-based articles about diets:

  • Do you get diabetes from eating too much sugar?

  • Low carb, Paleo or fasting – which diet is best?

  • Does eating at night make you fat?

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Kombucha, kimchi and yogurt: how fermented foods could be harmful to your health (2024)

FAQs

What are some negative effects of fermentation products on human health? ›

However, some people might experience severe side effects after consuming fermented foods.
  • Bloating. The most common reaction to fermented foods is a temporary increase in gas and bloating. ...
  • Headaches and migraines. ...
  • Histamine intolerance. ...
  • Food-borne illness. ...
  • Infection from probiotics. ...
  • Antibiotic resistance.
Nov 13, 2019

What happens if you eat too much fermented food? ›

Due to the high probiotic content of fermented foods, the most common side effect is an initial and temporary increase in gas and bloating ( 32 ). These symptoms may be worse after consuming fiber-rich fermented foods, such as kimchi and sauerkraut.

What are the disadvantages of fermentation food? ›

The downside of fermentation

Another disadvantage is the high sodium levels in many fermented foods. Under some conditions, harmful microbes may also cause undesirable effects from the ingestion of fermented foods in certain conditions, such as mycotoxicosis and botulinism.

Is too much kimchi bad for you? ›

First, the popular side dish contains a lot of salt, which is never great for health. Secondly, beyond the one-to-three servings per day that did show a benefit, eating more kimchi was linked with obesity overall, the study found.

What are the disadvantages of kombucha? ›

The caffeine in kombucha, especially when taken in large amounts, can worsen diarrhea. Irritable bowel syndrome (IBS): Kombucha contains caffeine. The caffeine in kombucha, especially when taken in large amounts, can worsen diarrhea and symptoms of IBS. Surgery: Kombucha seems to affect blood glucose levels.

Who should avoid fermented foods? ›

People Who Shouldn't Eat Fermented Foods
  • People with Histamine Intolerance. ...
  • People with Compromised Immune Systems. ...
  • Children and Pregnant Women. ...
  • People with Digestive Disorders. ...
  • People on a Strict Sodium-Restricted Diet. ...
  • Gas and Bloating. ...
  • Diarrhea. ...
  • Allergic Reactions.
Mar 15, 2023

Is kimchi bad for your stomach? ›

The fiber and probiotics in kimchi can help you maintain a healthy digestive system. The probiotics in fermented food can help reduce the negative symptoms of many gastrointestinal disorders, such as irritable bowel syndrome and colon inflammation.

What 3 foods are bad for your gut? ›

As part of healthy eating, it's a good idea to avoid or limit foods packed with added sugar, which feeds bad bacteria, Blatner says, as well as highly processed foods, artificial sweeteners, red meat, and alcohol, which can have a negative effect on gut bacteria, and lead to inflammation.

Who should not eat sauerkraut? ›

If you're pregnant or immunocompromised, you should avoid eating unpasteurized sauerkraut. If you take MAOIs, have blood pressure concerns, or have food intolerances or allergies, speak to your doctor before eating sauerkraut. Otherwise, sauerkraut is likely to be a nutritious and healthy addition to your diet.

What are the hazards of fermentation? ›

Botulism, E. coli and salmonella are the main hazards for fermented foods. Botulism can form in oxygen-free conditions if a fermentation is not successful and acid levels are too low.

Are fermented foods high risk? ›

Although most fermented foods are generally considered safe, some varieties — including fermented milk products such as kefir — are more susceptible to contamination with toxins and bacteria ( 43 ).

Are fermented foods high in histamine? ›

Foods with lower levels of histamine typically include fresh, unprocessed produce. Fermented foods tend to have high levels. Histamine is a chemical, known as a biogenic amine. It plays a role in several of the body's major systems, including the immune, digestive, and neurological systems.

When should you not eat kimchi? ›

It will continue to ferment at a cool temperature. If kimchi over-ferments, it will have a very vinegary odor and taste. It is not pleasant to eat raw, so it is often used for soups and stews. If any fermentation gets soft and slimy, then it is a sign of spoilage.

What happens to your body when you eat kimchi everyday? ›

Research shows that eating kimchi may slow down plaque formation in arteries, thereby lowering LDL cholesterol levels. 6 This heart-protective benefit could also be linked to the antioxidants, folate and fiber present in the preserved vegetable.

How many times a week should you eat kimchi? ›

People who regularly eat the fermented vegetable dish kimchi — up to three times daily — may lower their risk of obesity. That's according to a study published today in the journal BMJ Open.

How are humans affected by fermentation? ›

Internal, or gut, fermentation increases the bioavailability of nutrients during digestion. Digestion is the process of mechanically and enzymatically breaking down organic food matter into macronutrients small enough for absorption through the intestinal barrier and into the bloodstream.

What does fermentation do to your body? ›

Most fermented foods contribute bacteria that have a potential probiotic effect. This means that these bacteria may help restore the balance of bacteria in your gut, support digestive health and alleviate any digestive issues.

What are the problems with fermentation? ›

Mushy ferments are often indication of improper fermentation due to a weak brine, too high a temperature during fermentation, uneven salt distribution or air pockets. Mushiness is caused by spoilage microorganisms, but pathogenic microorganism can also be present; it is best practice to discard.

What is the consequence of fermentation? ›

Fermentation can lead to the release of bound phenolics and the biotransformation of phenolic compounds by microorganisms, which ultimately influences the bioactivity and bioavailability of the resulting fermented foods (Melini and Melini, 2021, Yang et al., 2023)..

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